Aspergillosis in Horses: Fungal Respiratory and Sinonasal Infection

Quick Answer
  • Aspergillosis is an uncommon fungal infection in horses caused by Aspergillus species. It can affect the nasal passages, sinuses, guttural pouch, or lungs.
  • Signs depend on location but may include one-sided nasal discharge, nosebleeds, trouble swallowing, noisy breathing, cough, fever, or exercise intolerance.
  • See your vet immediately if your horse has nosebleeds, difficulty breathing, trouble swallowing, or neurologic changes. Guttural pouch fungal disease can become life-threatening fast.
  • Diagnosis usually involves upper airway endoscopy, imaging, and sampling for cytology, biopsy, and fungal culture or molecular testing.
  • Treatment is tailored to the site and severity of infection. Options may include topical antifungal therapy, repeated lavage, surgery or vascular procedures, and supportive care.
Estimated cost: $600–$8,000

What Is Aspergillosis in Horses?

Aspergillosis is a fungal infection caused by Aspergillus species, molds that are common in the environment. In horses, this infection is uncommon but important because it can involve the nasal passages and sinuses, the guttural pouch, or more rarely the lungs. The exact form matters, because the risks, testing, and treatment plan can look very different from one horse to another.

In sinonasal disease, fungal growth may cause chronic nasal irritation, discharge, and sometimes facial discomfort. In guttural pouch mycosis, fungal plaques can develop near major blood vessels and cranial nerves. That form is especially serious because it can lead to sudden bleeding from the nose, swallowing problems, or nerve-related signs. Pulmonary aspergillosis is rare in horses and is more often reported in horses with severe underlying illness or immune compromise.

For pet parents, the key point is that aspergillosis is not the same as a routine bacterial respiratory infection. If your horse has persistent one-sided nasal discharge, repeated nosebleeds, or trouble swallowing, your vet may recommend a more targeted workup to look for fungal disease.

Symptoms of Aspergillosis in Horses

  • Chronic or recurrent nasal discharge, sometimes from one nostril
  • Blood-tinged discharge or true nosebleeds
  • Bad odor from the nose or upper airway
  • Head shaking or holding the head low or extended
  • Difficulty swallowing or feed material coming from the nose
  • Noisy breathing or increased breathing effort
  • Cough, fever, or exercise intolerance if the lungs are involved
  • Facial swelling, sinus discomfort, or reduced appetite
  • Neurologic signs such as laryngeal dysfunction or other cranial nerve deficits in severe guttural pouch disease

Mild cases may start with vague upper airway signs, especially chronic discharge or intermittent irritation. More serious cases can involve epistaxis, difficulty swallowing, respiratory distress, or nerve dysfunction. Those signs raise concern for guttural pouch involvement, where nearby arteries and cranial nerves can be affected.

See your vet immediately if your horse has any nosebleed, trouble breathing, trouble swallowing, weakness, or sudden behavior changes. Even a small amount of blood from one nostril can be an early warning sign in horses with fungal disease of the guttural pouch.

What Causes Aspergillosis in Horses?

Aspergillus fungi are widespread in hay, bedding, dust, soil, and other organic material. Most horses inhale fungal spores regularly without becoming sick. Disease usually develops when spores are able to colonize damaged tissue or when the horse has another health problem that makes infection easier to establish.

In horses, aspergillosis has been associated with guttural pouch mycosis, sinonasal infection, and rarely pulmonary disease. For lung involvement, veterinary references note that severe intestinal inflammation or other causes of reduced immune defense may play a role. In practical terms, your vet may look for recent serious illness, prolonged stress, poor body condition, heavy environmental mold exposure, or other factors that could have weakened normal defenses.

This does not mean a pet parent caused the problem. Many horses with fungal disease do not have an obvious trigger. Still, moldy hay, damp bedding, dusty storage areas, and delayed evaluation of chronic nasal signs can all make it harder to control respiratory health.

How Is Aspergillosis in Horses Diagnosed?

Diagnosis starts with a careful exam and a clear history of the signs you have noticed at home. Your vet will want to know whether the discharge is one-sided or two-sided, whether there has been any bleeding, and whether your horse has trouble swallowing, coughing, fever, or reduced performance. Because fungal disease can mimic bacterial sinusitis, dental disease, and other upper airway problems, testing is usually needed.

A common next step is endoscopy of the upper airway and guttural pouches. This allows your vet to directly look for fungal plaques, bleeding sites, discharge, or nerve-related changes. Depending on the suspected location, your vet may also recommend skull radiographs, sinus imaging, or advanced imaging such as CT at a referral hospital.

To confirm the cause, your vet may collect samples for cytology, biopsy, fungal culture, and sometimes molecular testing. Culture alone is not always enough because Aspergillus can be present in the environment, so results are interpreted along with the horse's signs, endoscopic findings, and tissue evaluation. Bloodwork may also be used to assess overall health and help guide anesthesia, sedation, or supportive care decisions.

Treatment Options for Aspergillosis in Horses

Spectrum of Care means you have options. Here are treatment tiers at different price points.

Budget-Conscious Care

$600–$1,800
Best for: Stable horses with mild upper airway signs, limited lesions, or pet parents who need a stepwise plan while still addressing the fungal infection responsibly.
  • Exam and sedation-based upper airway endoscopy
  • Basic bloodwork and targeted sampling when accessible
  • Stall rest and close monitoring for bleeding, swallowing changes, or respiratory effort
  • Topical therapy or lavage when your vet feels the lesion is limited and the horse is stable
  • Environmental cleanup such as removing moldy hay or damp bedding
Expected outcome: Variable. Some localized cases improve, but prognosis is guarded if the lesion is near major vessels or if signs are progressing.
Consider: Lower upfront cost range, but it may not fully address deeper disease. Recheck visits are important, and delayed escalation can increase risk in horses with guttural pouch involvement.

Advanced / Critical Care

$4,500–$8,000
Best for: Horses with nosebleeds, dysphagia, neurologic signs, pulmonary involvement, recurrent disease, or lesions close to major arteries.
  • Referral hospital care with repeat endoscopy and advanced imaging such as CT
  • Emergency stabilization for epistaxis or respiratory compromise
  • Transarterial coil embolization, balloon occlusion, or surgical vascular procedures for guttural pouch mycosis when major vessels are at risk
  • Intensive antifungal treatment, nutritional support, and management of aspiration risk or cranial nerve deficits
  • Longer hospitalization and serial rechecks to confirm lesion resolution
Expected outcome: Guarded, but advanced care can be lifesaving in horses with hemorrhage risk. Long-term outcome depends on whether blood vessels or cranial nerves have already been damaged.
Consider: Highest cost range and referral-level intensity. Recovery can be prolonged, and some horses survive the infection but have lasting nerve-related deficits.

Cost estimates as of 2026-03. Actual costs vary by location, clinic, and individual case.

Questions to Ask Your Vet About Aspergillosis in Horses

Bring these questions to your vet appointment to get the most out of your visit.

  1. Where do you think the infection is located: nasal passages, sinuses, guttural pouch, or lungs?
  2. Does my horse need endoscopy today, especially if there has been any blood from the nose?
  3. Which tests will best confirm fungal infection in this case: biopsy, cytology, culture, PCR, or imaging?
  4. Is my horse at risk for sudden bleeding or aspiration, and what warning signs should I watch for at home?
  5. What treatment options fit my horse's condition and my budget, and what are the tradeoffs of each?
  6. How often will my horse need rechecks or repeat endoscopy to know whether treatment is working?
  7. Should I change hay, bedding, ventilation, or storage practices while my horse is recovering?
  8. What is the expected prognosis for my horse's specific form of aspergillosis?

How to Prevent Aspergillosis in Horses

You cannot remove Aspergillus from the environment completely, but you can lower exposure and support your horse's normal airway defenses. Focus on clean, dry hay and bedding, good barn ventilation, and prompt removal of moldy feed or damp organic material. Store hay where it stays dry, and avoid feeding visibly moldy or dusty forage.

Prevention also means taking chronic respiratory or nasal signs seriously. A horse with ongoing one-sided discharge, repeated mild nosebleeds, or swallowing changes should be examined sooner rather than later. Early evaluation gives your vet a better chance to identify fungal plaques or sinus disease before complications develop.

If your horse is recovering from a major illness, especially severe gastrointestinal disease, follow your vet's aftercare plan closely. Good nutrition, hydration, dental care, and management of other underlying conditions all help support the immune system. These steps cannot guarantee prevention, but they can reduce risk and improve the odds of catching a problem early.